PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA33G00005
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 586aa    MW: 66636 Da    PI: 4.8269
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA33G00005genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-12327370755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +ErrRR+++N+++  Lr+l+P       +Kl+ a+iL  A++Y+k+Lq
  AA33G00005 327 LAERRRRKKLNDRLYALRSLVPRI-----TKLDRASILGDAINYVKELQ 370
                 68*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.1E-1810149IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000833.59E-14318372No hitNo description
PROSITE profilePS5088816.387320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-17323385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-16326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16327383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-10327370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MENSIQNLLE KLRPLVGSRA WDYCVLWRLN EDQRFVKWMG CCCGGTEVMI ENNGSEEFNF  60
GSCRDVMFHH PRTKSCEFLA HLPSSIPLDS GIYAETLLTN QTGWLSESSE PGFMQETICT  120
RVLIPIPGGL VELFVTRHVP EDQNVVDFVM GQCNILIDDQ TVNINMMVAA AADEVESKPY  180
GGLPNEIHER NSKVDEMMNL PSPYDISTDQ IRINFLPQMN DFESQQNQQL KMKSDYHQGL  240
GYLPENSNKE MGLNPFNTVT EDEIAVMANG GGMQQHVESG EPPSLQDVND KENENGRLDS  300
GSDCSDQIDD EDDTKCKKKT GQAKNLLAER RRRKKLNDRL YALRSLVPRI TKLDRASILG  360
DAINYVKELQ NESKELQDEL EENSETEDGC NRQGGMSLNG TVLTGAHSDF IKGLSCNSNV  420
PNLKQDLDLE NSNDKGQEME PQVDVAQLDG KEFFVKVICE YKPGGFTRLM EAMDSLGLEV  480
TNANTTRYLS LVSNVFKVEK KDGEMVQAEH VRNSLLDITR NTSRVWHDDH QMGTTSVQNE  540
VEYQQYDDHH HHDGHNHLHD HQMNPNIHHH HHHQQQHIHH NYHNQV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316334KKKTGQAKNLLAERRRRKK
2328335ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006409372.10.0hypothetical protein EUTSA_v10022620mg
SwissprotQ9ZVX20.0AMS_ARATH; Transcription factor ABORTED MICROSPORES
TrEMBLV4LJU20.0V4LJU2_EUTSA; Uncharacterized protein
STRINGAT2G16910.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75892741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.10.0bHLH family protein